This repository was previously forked from casperwberg/surveyIndex and previously named emilymarkowitz-noaa/surveyIndex.
R package for calculating survey indices by age from DATRAS exchange data.
This code is always in development. Find code used for various reports in the code releases.
Code has been modified and adapted by:
Emily Markowitz (Emily.Markowitz AT noaa.gov; @EmilyMarkowitz-NOAA)
Margaret Siple (Margaret.Siple AT noaa.gov; @MargaretSiple-noaa)
Alaska Fisheries Science Center
National Marine Fisheries Service
National Oceanic and Atmospheric Administration
Seattle, WA 98195
Code was originally developed by:
Casper W. Berg (https://orbit.dtu.dk/en/persons/casper-willestofte-berg; @casperwberg)
National Institute of Aquatic Resources,
Technical University of Denmark
Based on the work published in: Berg et al. (2014)
Repository: remotes::install_github("casperwberg/surveyIndex/surveyIndex")
Installation
To install you need the DATRAS package
library(remotes)
remotes::install_github("DTUAqua/DATRAS/DATRAS")
# remotes::install_github("casperwberg/sdmgamindex/sdmgamindex")
remotes::install_github("emilymarkowitz-noaa/sdmgamindex")Usage
See examples in the pkgdown site and in the ?get_surveyidx() documentation.
Metadata
This package was last produced using:
## R version 4.3.1 (2023-06-16 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 19045)
##
## Matrix products: default
##
##
## locale:
## [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8 LC_NUMERIC=C LC_TIME=English_United States.utf8
##
## time zone: America/Los_Angeles
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] knitr_1.45 badger_0.2.3 pkgdown_2.0.7 usethis_2.2.3 here_1.0.1
##
## loaded via a namespace (and not attached):
## [1] gtable_0.3.4 httr2_1.0.0 xfun_0.42 ggplot2_3.5.0 htmlwidgets_1.6.4 devtools_2.4.5 remotes_2.4.2.1 gh_1.4.0 yulab.utils_0.1.4 vctrs_0.6.5 tools_4.3.1 generics_0.1.3 curl_5.2.1
## [14] tibble_3.2.1 fansi_1.0.6 pkgconfig_2.0.3 RColorBrewer_1.1-3 lifecycle_1.0.4 compiler_4.3.1 stringr_1.5.1 credentials_2.0.1 dlstats_0.1.7 munsell_0.5.0 janitor_2.2.0 snakecase_0.11.1 httpuv_1.6.14
## [27] sys_3.4.2 htmltools_0.5.7 yaml_2.3.8 crayon_1.5.2 later_1.3.2 pillar_1.9.0 urlchecker_1.0.1 ellipsis_0.3.2 RODBC_1.3-23 openssl_2.1.1 cachem_1.0.8 sessioninfo_1.2.2 mime_0.12
## [40] tidyselect_1.2.0 digest_0.6.34 stringi_1.8.3 dplyr_1.1.4 purrr_1.0.2 rprojroot_2.0.4 fastmap_1.1.1 grid_4.3.1 colorspace_2.1-0 cli_3.6.2 magrittr_2.0.3 pkgbuild_1.4.3 utf8_1.2.4
## [53] rappdirs_0.3.3 scales_1.3.0 promises_1.2.1 lubridate_1.9.3 timechange_0.3.0 rmarkdown_2.25 gitcreds_0.1.2 rvcheck_0.2.1 askpass_1.2.0 memoise_2.0.1 shiny_1.8.0 evaluate_0.23 miniUI_0.1.1.1
## [66] profvis_0.3.8 rlang_1.1.3 gert_2.0.1 Rcpp_1.0.12 xtable_1.8-4 glue_1.7.0 BiocManager_1.30.22 pkgload_1.3.4 rstudioapi_0.15.0 jsonlite_1.8.8 R6_2.5.1 fs_1.6.3NOAA README
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